We are proven partners

From the bench to the boardroom, we help life science organizations maximize productivity.

Combined, our staff has hundreds of years of experience developing solutions in the scientific domain. Our knowledge of science and our objectivity fuel our passion and ability to develop the best solution imaginable. We are committed to the scientific process and we are adamant about the success of our customers.

We are proven partners, which is why our customers keep returning and our engagements keep expanding.

We Advance Scientific Inquiry

Our approach is to put science first

Our goal is to make scientists as productive as possible by tailoring our solutions specifically to their needs. When building our solutions, we start by understanding the specific needs, then proposing solution designs and technologies that are customized to meet those needs in the most optimal way.

We Help Your Team Scale

Find highly qualified resources fast.

We have built, trained and nurtured a highly diverse and distributed team that is uniquely qualified to tackle Life Science projects. Our expertise in Scientific Inquiry, Life Science data management and workflows, Big Data analytics and visualizations makes us a unique partner for your projects.

Whether you need temporary help for a short term, or a multi-year commitment on a large project, we can provide flexible and highly knowledgeable resources.

Technology

Callisto Framework

Comprehensive set of reusable services, components, and code, tailored for flexibility and scalability in the life sciences domain. Designed originally to accelerate and streamline the development of custom projects. Built over 5 years.

Cloud-Native Microservices: Built with robust low-level security, multi-tenant support, and an intuitive administration UI, Callisto powers modern, secure, and scalable applications.
Rich Object Management: A proprietary object-based system enables tagging, storage, search, attributes, and hierarchy, ensuring seamless data organization.
Optimized for Speed & Cost: Kubernetes-based workers deliver unparalleled performance with support for multiple programming languages, including R, Python, C++, C#, Java, and Rust.
Fast & Interactive Insights: Lightning-fast data access and dynamic visualizations that enhance decision-making.

Products

Europa DX™ Platform

EuropaDX is a commercial-off-the-shelf cloud Platform for multi-omics life sciences Data eXploration built on the Seattle Biosoftware Technology Framework, Callisto.

EuropaDX currently supports following omics technology types: microarrays, bulk and single cell RNA sequencing, mass spec, and protein-based detection.
Customers can license the selected EuropaDX Platform’s technology-specific components that they need.
The Platform is designed for rapidly configuring and/or adding new and custom technology types and workflows and for easy integration with customer informatics ecosystems (SSO, VPC integration, etc.).
Seattle Biosoftware provides integration, customization, configuration, and support services for all EuropaDX products.

EuropaDX landing

EuropaDX enables scientists to easily manage, process, and share large multi-omics datasets working end-to-end from data import to biological interpretation.

Built-in workflows, pipelines for analysis and ML, automation, algorithm integration, public database search and import, to facilitate comparison with published results.

Please Contact Us to find out more about the EuropaDX Platform.

Services

Services we provide

Platform Configuration & Customization

Rapidly add technology types and workflows and integrate with customer informatics ecosystems

High Value Custom Solutions

Building solutions to specified data analysis, throughput, and cost requirements

Data Management

Cloud solutions for large volume dataset storage, processing, visualiztion and sharing

AI/ML Solutions

Custom algorithm design and implementation, building classifiers, and model training

Scientific Consulting

Data analysis, experiment design, visualization optimization, and scientific writing assistance

Projects

Selected examples of our recent projects

EuropaDX

Seattle Biosoftware designed and developeed a web based Life Science Data eXploration platform built on top of our powerful framework. EuropaDX enables scientists to easily manage, process and share large multiomics datasets. Built-in workflows, automation, and public database search and import facilitate comparison with published results.

GeoMx

Seattle Biosoftware developed a custom data analysis software for the first-in-class spatial profiling microscope. We worked collaboratively with the customer to develop a powerful, interactive solution to enable scientists to gain new knowledge using this state-of-the-art system

PDM portal

Seattle Biosoftware designed and develoeed a portal for storing, searching and visualizations of data derived from PDX and other experimental models. The portal has been instrumental in helping scientists accelerate knowledge discovery by providing ability to access and share experimental data and analyses including expression, pathways, mutations, etc. of tens of thousands of samples.

Cloud NGS processing system

Seattle Biosoftware used internal framework to create a web-based solution for custom NGS sample processing. The system is scalable, handles millions of records, offers automated job handling, file selection and process automation including cost optimization. implemented solution allows customer to start a complex job that involves thousands of specific files and complex settings with just a few clicks. Users can instantly download processed data or easily find old results.

Interactive GWAS browser

Seattle Biosoftware designed and developed an interactive GWAS browser for a specific purpose of easily finding correlates of of the clinical phenotype studies. Our cloud-based solution allows easy access, custom data loading and user sharing.

Crowdsourcing training data

Seattle Biosoftware was implemented a solution for crowdsourcing training data for machine learning based endoscopy interpretation software. Customer wanted solution that is based on an existing open source program, but it was not supporting speed and load that was needed. We have modified this software, implemented it in the AWS cloud and pushed our code back to the git project for others to use.